癌症液体活检（Cancer Liquid Biopsy）

肿瘤转移的分子机理与抑制方法（Cancer metastasis）

生物信息学（Bioinformatics/Computational Biology）

长链非编码RNA（Long noncoding RNA）

大数据挖掘、人工智能、可视化（Data mining/Augmented Intelligence/Data visualization）

An Y, Zhao X, Zhang Z, Xia Z, Yang M, Ma L, Zhao Y, Xu G, Du S, Wu X, Zhang S, Hong X, Jin X*, Sun K*. DNA methylation analysis explores the molecular basis of plasma cell-free DNA fragmentation. Nat Commun 2023 Jan 18; 14(1):287

Jiang P#, Sun K#, Peng W#, Cheng SH, Ni M, Yeung PC, Heung MMS, Xie T, Shang H, Zhou Z, Chan RWY, Wong J, Wong VWS, Poon LC, Leung TY, Lam WKJ, Chan JYK, Chan HLY, Chan KCA, Chiu RWK, Lo YMD. Plasma DNA end motif profiling as a fragmentomic marker in cancer, pregnancy and transplantation. Cancer Discov 2020 May; 10(5):664-673.

Sun K*, Jiang P, Cheng SH, Cheng THT, Wong J, Wong VWS, Ng SSM, Ma BBY, Leung TY, Chan SL, Mok TSK, Lai PBS, Chan HLY, Sun H, Chan KCA, Chiu RWK, Lo YMD*. Orientation-aware plasma cell-free DNA fragmentation analysis in open chromatin regions informs tissue of origin. Genome Res 2019 Mar; 29(3):418-427.

Sun K, Jiang P, Wong AIC, Cheng YKY, Cheng SH, Zhang H, Chan KCA, Leung TY, Chiu RWK, Lo YMD. Size-tagged preferred ends in maternal plasma DNA shed light on production mechanism and show utility in noninvasive prenatal testing. Proc Natl Acad Sci U S A 2018 May 29; 115(22):E5106-E5114

Sun K#, Jiang P#, Chan KCA#, Wong J, Cheng YK, Liang RH, Chan WK, Ma ES, Chan SL, Cheng SH, Chan RW, Tong YK, Ng SS, Mong RSM, Hui DS, Leung TN, Leung TY, Lai PBS, Chiu RWK, Lo YMD. Plasma DNA tissue mapping by genomewide methylation sequencing for noninvasive prenatal, cancer and transplantation assessments. Proc Natl Acad Sci U S A 2015 Oct 6; 112(40):E5503-12.

Sun K*, Wang H, Sun H*. NAMS webserver: coding potential assessment and functional annotation of plant transcripts. Brief Bioinform 2021 May 20; 22(3):bbaa200.

Sun K*, Li L, Ma L, Zhao Y, Deng L, Wang H, Sun H. Msuite: a high-performance and versatile DNA methylation data-analysis toolkit. Patterns (N Y) 2020 Oct 15; 1(8):100127.

Zhou L#, Sun K#, Zhao Y#, Zhang S, Wang X, Li Y, Lu L, Chen X, Chen F, Bao X, Zhu X, Wang L, Tang LY, Esteban MA, Wang R, Jauch R, Sun H, Wang H. Linc-YY1 promotes myogenic differentiation and muscle regeneration through an interaction with the transcription factor YY1. Nat Commun 2015 Dec 11; 6:10026.

Lu L#, Sun K#, Chen X, Zhao Y, Wang L, Zhou L, Sun H, Wang H. Genome-wide survey by ChIP-seq reveals YY1 regulation of lincRNAs in skeletal myogenesis. EMBO J 2013 Oct 2; 32(19):2575-88.